Basic Information
Locus ID:
gene_12258
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Found in Skp1 protein family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 3088135 | 3090881 | + | gene_12258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 36,959.85 Da | 42.40 | 87.47 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18322 | BTB_POZ_SKP1 | 175 | 301 | 1.76871E-57 | - |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 287 | 334 | 8.2E-27 | IPR016072 |
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 174 | 233 | 7.3E-27 | IPR016073 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 259 | 334 | 1.7E-30 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 174 | 234 | 1.86E-20 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 171 | 336 | 1.4E-70 | IPR011333 |
| SMART | SM00512 | skp1_3 | 173 | 286 | 9.5E-44 | IPR001232 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20140.1 | SKP1-like 4. | 0 |
| RefSeq | XP_010690359.2 | SKP1-like protein 1B [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LNT9 | SKP1-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=ASK4 PE=1 SV=1 | 0 | |
| TrEMBL | Q2PH50 | SKP1-like protein OS=Silene latifolia OX=37657 GN=SlSKP1-4 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
No orthogroup found for gene_12258.