Basic Information
Locus ID:
gene_12216
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
WD40-like Beta Propeller Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 2377750 | 2382871 | + | gene_12216 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 83,704.31 Da | 35.09 | 69.03 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 394 | 407 | 0.012 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 612 | 630 | 0.0062 | IPR011659 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 144 | 627 | 6.47E-23 | - |
| Gene3D | G3DSA:2.120.10.30 | - | 534 | 688 | 4.2E-11 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 378 | 533 | 2.5E-10 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 88 | 324 | 1.6E-9 | IPR011042 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21680.1 | DPP6 N-terminal domain-like protein. | 0 |
| RefSeq | XP_030508726.1 | uncharacterized protein LOC115723393 [Cannabis sativa] | 0 |
| TrEMBL | A0A803Q3R6 | Protein TolB OS=Cannabis sativa OX=3483 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology