Basic Information
Locus ID:
gene_12213
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
WD40-like Beta Propeller Repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 2345072 | 2348509 | + | gene_12213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 85,960.55 Da | 39.03 | 75.78 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 648 | 663 | 0.031 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 575 | 606 | 2.9E-6 | IPR011659 |
| Pfam | PF07676 | WD40-like Beta Propeller Repeat | 433 | 445 | 0.034 | IPR011659 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 182 | 694 | 1.79E-24 | - |
| Gene3D | G3DSA:2.120.10.30 | - | 555 | 723 | 1.4E-16 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 179 | 361 | 7.4E-7 | IPR011042 |
| Gene3D | G3DSA:2.120.10.30 | - | 413 | 545 | 7.5E-10 | IPR011042 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21680.1 | DPP6 N-terminal domain-like protein. | 0 |
| RefSeq | XP_021640823.1 | uncharacterized protein LOC110635701 isoform X2 [Hevea brasiliensis] | 0 |
| TrEMBL | B9SDT5 | Peptidase_S9 domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_1711490 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology