Basic Information
Locus ID:
gene_12196
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 2065121 | 2068144 | + | gene_12196 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 58,507.17 Da | 40.89 | 85.34 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 61 | 201 | 1.1E-16 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 57 | 241 | 5.25E-19 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 61 | 249 | 4.2E-20 | IPR036465 |
| SMART | SM00327 | VWA_4 | 59 | 230 | 9.6E-13 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 61 | 246 | 12.19002 | IPR002035 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_028110410.1 | E3 ubiquitin-protein ligase WAV3-like [Camellia sinensis] | 0 |
| TrEMBL | A0A7J7HMM7 | VWFA domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_006347 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology