Basic Information
Locus ID:
gene_12192
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 1985144 | 1987872 | + | gene_12192 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 58,717.21 Da | 36.28 | 86.99 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 400 | 464 | 7.2E-8 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 60 | 216 | 2.8E-22 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 57 | 215 | 3.48E-27 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 60 | 230 | 6.1E-36 | IPR036465 |
| SMART | SM00327 | VWA_4 | 58 | 223 | 1.7E-20 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 60 | 240 | 19.005283 | IPR002035 |
| Coils | Coil | Coil | 333 | 390 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_028067124.1 | E3 ubiquitin-protein ligase WAV3-like [Camellia sinensis] | 0 |
| TrEMBL | A0A2P5D053 | von Willebrand factor, type A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_108790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology