Basic Information
Locus ID:
gene_12190
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ordered Locus Names sll0103
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 1948557 | 1953084 | + | gene_12190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 60,008.58 Da | 32.85 | 96.39 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 410 | 474 | 7.0E-10 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 65 | 229 | 7.7E-15 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 61 | 227 | 1.93E-19 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 64 | 239 | 1.2E-23 | IPR036465 |
| SMART | SM00327 | VWA_4 | 63 | 236 | 6.6E-15 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 65 | 242 | 14.708322 | IPR002035 |
| Coils | Coil | Coil | 383 | 403 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54780.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_028067124.1 | E3 ubiquitin-protein ligase WAV3-like [Camellia sinensis] | 0 |
| TrEMBL | A0A2P5D053 | von Willebrand factor, type A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_108790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology