Basic Information
Locus ID:
gene_12189
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 1933769 | 1936431 | + | gene_12189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.87 | 41,142.26 Da | 35.85 | 90.86 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 2 | 158 | 1.4E-21 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 301 | 360 | 6.7E-6 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 1 | 159 | 1.19E-26 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 2 | 163 | 3.1E-32 | IPR036465 |
| SMART | SM00327 | VWA_4 | 1 | 163 | 5.7E-16 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 2 | 180 | 18.406527 | IPR002035 |
| Coils | Coil | Coil | 269 | 289 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002524159.1 | uncharacterized protein sll0103 [Ricinus communis] | 0 |
| TrEMBL | A0A2P5D053 | von Willebrand factor, type A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_108790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology