Basic Information
Locus ID:
gene_12188
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 1923950 | 1926542 | + | gene_12188 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 57,931.12 Da | 29.58 | 87.58 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 403 | 465 | 1.1E-6 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 65 | 221 | 4.1E-22 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 62 | 221 | 9.3E-29 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 65 | 233 | 2.6E-38 | IPR036465 |
| SMART | SM00327 | VWA_4 | 63 | 228 | 7.4E-20 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 65 | 245 | 17.948654 | IPR002035 |
| Coils | Coil | Coil | 529 | 529 | - | - |
| Coils | Coil | Coil | 340 | 374 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_010235116.1 | uncharacterized protein LOC100846008 [Brachypodium distachyon] | 0 |
| Q14624 | Inter-alpha-trypsin inhibitor heavy chain H4 OS=Homo sapiens OX=9606 GN=ITIH4 PE=1 SV=4 | 0 | |
| TrEMBL | A0A2P5D053 | von Willebrand factor, type A OS=Parasponia andersonii OX=3476 GN=PanWU01x14_108790 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology