Basic Information
Locus ID:
gene_12187
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Ordered Locus Names sll0103
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 1890810 | 1894250 | + | gene_12187 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 59,830.49 Da | 33.52 | 92.16 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13768 | von Willebrand factor type A domain | 66 | 220 | 6.3E-20 | IPR002035 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 407 | 474 | 1.2E-10 | IPR032838 |
| SUPERFAMILY | SSF53300 | vWA-like | 62 | 227 | 9.6E-23 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 65 | 239 | 1.1E-28 | IPR036465 |
| SMART | SM00327 | VWA_4 | 64 | 243 | 1.7E-15 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 66 | 244 | 17.349895 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54780.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_028103695.1 | E3 ubiquitin-protein ligase WAV3-like isoform X2 [Camellia sinensis] | 0 |
| TrEMBL | A0A2P5FT01 | von Willebrand factor, type A OS=Trema orientale OX=63057 GN=TorRG33x02_031090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology