Basic Information
Locus ID:
gene_12131
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 739608 | 746774 | + | gene_12131 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 63,362.03 Da | 46.16 | 89.28 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02440 | AdoMet_MTases | 380 | 505 | 8.17548E-10 | - |
| Pfam | PF01029 | NusB family | 120 | 242 | 6.3E-22 | IPR006027 |
| Pfam | PF01189 | 16S rRNA methyltransferase RsmB/F | 370 | 565 | 9.7E-54 | IPR001678 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 264 | 567 | 9.28E-65 | IPR029063 |
| SUPERFAMILY | SSF48013 | NusB-like | 138 | 276 | 1.44E-25 | IPR035926 |
| Gene3D | G3DSA:3.30.70.1170 | Sun protein; domain 3 | 259 | 365 | 1.8E-8 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 367 | 568 | 6.5E-65 | - |
| Gene3D | G3DSA:1.10.940.10 | - | 103 | 252 | 3.3E-23 | IPR035926 |
| TIGRFAM | TIGR00563 | rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase | 141 | 567 | 7.7E-84 | IPR004573 |
| ProSiteProfiles | PS51686 | SAM-dependent MTase RsmB/NOP-type domain profile. | 292 | 568 | 55.776104 | IPR001678 |
| ProSitePatterns | PS01153 | NOL1/NOP2/sun family signature. | 448 | 459 | - | IPR018314 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 381 | 391 | 1.0E-24 | IPR023267 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 449 | 461 | 1.0E-24 | IPR023267 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 499 | 515 | 1.0E-24 | IPR023267 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 550 | 567 | 1.0E-24 | IPR023267 |
| PRINTS | PR02009 | Viridiplantae FMU-related RCMT signature | 249 | 262 | 1.0E-33 | IPR023268 |
| PRINTS | PR02009 | Viridiplantae FMU-related RCMT signature | 526 | 538 | 1.0E-33 | IPR023268 |
| PRINTS | PR02009 | Viridiplantae FMU-related RCMT signature | 133 | 149 | 1.0E-33 | IPR023268 |
| PRINTS | PR02008 | RNA (C5-cytosine) methyltransferase signature | 352 | 366 | 1.0E-24 | IPR023267 |
| PRINTS | PR02009 | Viridiplantae FMU-related RCMT signature | 109 | 132 | 1.0E-33 | IPR023268 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 91 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13180.1 | NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein. | 0 |
| RefSeq | XP_021740722.1 | uncharacterized protein LOC110707013 [Chenopodium quinoa] | 0 |
| P94464 | Probable ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) OX=224308 GN=rsmB PE=3 SV=2 | 0 | |
| TrEMBL | A0A0K9RWC2 | 16S rRNA (cytosine(967)-C(5))-methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_020610 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20187 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12131 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah009070 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g090540 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18530, Sbi_jg36928 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4805 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017319 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23572, Sgl28773 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009095, gene:ENSEOMG00000028930 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0001030, CQ.Regalona.r1.4BG0026080 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30153020, pistato.v30154760 |
| Apiaceae | Apium graveolens | 1 | Ag9G01848 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G013560 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720692, gene-LOC120111926 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2219.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G12432 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G13180.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020504m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g11360.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g055780.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1491 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1655 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g04230 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0470s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g17210 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.2044 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G11870, Lb3G20046, Lb3G20047, Lb4G23470 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2299, BH03.2094, CH03.2627 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0538740, gene-QOZ80_6BG0491980 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0488940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_006001 |
| Poaceae | Oryza coarctata | 2 | Oco17G007410, Oco18G007640 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g30100.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G216000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701708 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G016450 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G405200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG039480, gene_TRIDC5BG041910 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G253000.1, TraesCS5B02G251800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb101440_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19562 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32738 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1660, evm.TU.LG26.5 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc01g28450, gene.Posoc03g08440, gene.Posoc06g19540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1648 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-8796, nbisL1-mrna-8797 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-377 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15052 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.36 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002786 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9378 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23755 |
| Salicaceae | Populus euphratica | 1 | populus_peu00894 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132636292 |
| Solanaceae | Solanum chilense | 1 | SOLCI007328500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007700 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31791_chr09_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0520 |
| Zosteraceae | Zostera marina | 1 | Zosma03g00130.v3.1 |