Basic Information
Locus ID:
gene_1213
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
protein binding zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 36130795 | 36138574 | - | gene_1213 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 43,889.10 Da | 72.71 | 73.86 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 278 | 323 | 1.1E-6 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 278 | 325 | 1.1E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 258 | 358 | 1.8E-8 | IPR013083 |
| SMART | SM00184 | ring_2 | 279 | 323 | 2.4E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 279 | 324 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 98 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75400.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010672885.2 | uncharacterized protein LOC104889378 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7C8Z084 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg26194, jg28780, jg30314, jg970 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1213, gene_26457 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010203, Ah023455 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g006880, BVRB_9g217060 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg11289, Sbi_jg11290, Sbi_jg12401, Sbi_jg28785 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20272, Seu_jg6744 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000036, GOSA_00022477 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl11581, Sgl16951, Sgl17078, Sgl56043, Sgl61377, Sgl61613 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000012860, gene:ENSEOMG00000016089 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0008750, CQ.Regalona.r1.1BG0017120 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30046910, pistato.v30115190 |
| Apiaceae | Apium graveolens | 2 | Ag1G00952, Ag9G00078 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G010660, COCNU_13G000590 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703762, gene-LOC103711556, gene-LOC120112380 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2694.V1.1, AsparagusV1_05.2747.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G33109, Ftri4G27838, Ftri8G21160 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G19680.1, AT1G75400.1, AT2G21500.2, AT4G39140.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000174m.g.v1.0, Thhalv10018531m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g00660.v2.2, Sp5g30540.v2.2, Sp7g36680.v2.2 |
| Brassicaceae | Brassica nigra | 6 | BniB02g017280.2N, BniB03g015370.2N, BniB03g053910.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0990, Ceq07G1554 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1074, Cgl07G1651 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g08560 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g35480, gene.Thate03g00340 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1337, nbisL1-mrna-3114 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.177 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007488 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G07331, Lb2G13483, Lb3G17332, Lb7G32798 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.949, AH02.950, BH02.1173, BH02.1174, CH02.1294 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_1AG0004830, gene-QOZ80_1AG0004840 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0254560.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_052314, gene-QYE76_052318 |
| Poaceae | Oryza coarctata | 3 | Oco01G007130, Oco02G007410, Oco02G007420 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g15630.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G108400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0603893, Pt_Chr0603915, Pt_Chr0603918 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G026400, Chr02G026410, Chr03G001790, Chr03G001800 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G311800, Tel3E01G312000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG024590, gene_TRIDC3AG024620 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G176600.1, TraesCS3A02G176900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb127990_P001, Zm00001eb333340_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32462, nbis-gene-7309 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g7389, Zma_g9723, Zma_g9724 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.335, evm.TU.LG08.1789, evm.TU.LG09.1587 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g03510 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_1_RagTag.2249, evm.TU.Scaffold_1_RagTag.2250 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-5023, nbisL1-mrna-9053 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-14076, nbisL1-mrna-17454, nbisL1-mrna-9926 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-15356, nbisL1-mrna-3301, nbisL1-mrna-9435 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000009l.1123, evm.TU.utg000016l.112 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003435, Maker00005303, Maker00016864 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-13335, nbisL1-mrna-14770, nbisL1-mrna-4672 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-11144, nbisL1-mrna-1228, nbisL1-mrna-22394 |
| Salicaceae | Populus euphratica | 4 | populus_peu08840, populus_peu15264, populus_peu32921 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599195, gene-LOC132606579 |
| Solanaceae | Solanum chilense | 2 | SOLCI001818500, SOLCI007335400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002711, gene-LOC107008499 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11470_chr02_+, STRG.18484_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0438, TC12G1006 |
| Zosteraceae | Zostera marina | 1 | Zosma01g06580.v3.1 |