Basic Information
Locus ID:
gene_12108
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
B3 domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 392589 | 394355 | + | gene_12108 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 54,410.18 Da | 34.61 | 95.34 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 256 | 389 | 6.5E-6 | IPR006527 |
| Pfam | PF00646 | F-box domain | 7 | 44 | 2.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 55 | 6.93E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 41 | 2.7E-5 | - |
| SMART | SM00256 | fbox_2 | 4 | 45 | 0.0015 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_050283019.1 | F-box/kelch-repeat protein At3g23880-like isoform X2 [Quercus robur] | 0 |
| TrEMBL | A0A0K9QY55 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_127200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_12103, gene_12108, gene_12109 |