Basic Information
Locus ID:
gene_12103
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box kelch-repeat protein At3g06240-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 337103 | 338621 | + | gene_12103 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 53,528.70 Da | 49.30 | 89.44 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 238 | 340 | 1.7E-7 | IPR006527 |
| Pfam | PF00646 | F-box domain | 9 | 44 | 4.7E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 59 | 1.7E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 61 | 1.8E-6 | - |
| SMART | SM00256 | fbox_2 | 12 | 53 | 1.4E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 130 | 334 | 6.3E-15 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 6 | 52 | 9.68293 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19930.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_030928547.1 | F-box/kelch-repeat protein At3g23880-like [Quercus lobata] | 0 |
| O49420 | F-box/kelch-repeat protein At4g19930 OS=Arabidopsis thaliana OX=3702 GN=At4g19930 PE=4 SV=1 | 0 | |
| TrEMBL | A0A7N2M9T0 | FBA_1 domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_12103, gene_12108, gene_12109 |