Basic Information
Locus ID:
gene_12095
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
DNA damage-inducible protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_12_Chr_6 | 265164 | 274292 | + | gene_12095 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 44,588.95 Da | 38.12 | 88.27 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05479 | RP_DDI | 183 | 306 | 4.30066E-76 | IPR019103 |
| CDD | cd01796 | Ubl_Ddi1_like | 1 | 70 | 3.29296E-19 | IPR033882 |
| CDD | cd14309 | UBA_scDdi1_like | 373 | 408 | 1.17398E-11 | - |
| Pfam | PF09668 | Aspartyl protease | 176 | 298 | 2.7E-54 | IPR019103 |
| Pfam | PF00627 | UBA/TS-N domain | 373 | 406 | 4.4E-8 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 70 | 7.1E-13 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 80 | 4.37E-18 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 357 | 410 | 8.51E-11 | IPR009060 |
| SUPERFAMILY | SSF50630 | Acid proteases | 184 | 299 | 4.22E-25 | IPR021109 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 85 | 2.7E-18 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 177 | 323 | 1.0E-42 | IPR021109 |
| Gene3D | G3DSA:1.10.8.10 | - | 342 | 410 | 3.9E-11 | - |
| SMART | SM00165 | uba_6 | 372 | 409 | 5.9E-7 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 72 | 2.0E-10 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 70 | 16.341646 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 369 | 410 | 13.149322 | IPR015940 |
| PRINTS | PR00348 | Ubiquitin signature | 32 | 52 | 4.5E-5 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 4.5E-5 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 364 | - | - |
| Coils | Coil | Coil | 128 | 151 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13235.3 | ubiquitin family protein. | 0 |
| RefSeq | XP_010676120.1 | protein DNA-DAMAGE INDUCIBLE 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q1EBV4 | Protein DNA-DAMAGE INDUCIBLE 1 OS=Arabidopsis thaliana OX=3702 GN=DDI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0J8F9V0 | DNA damage-inducible protein 1 OS=Beta vulgaris subsp. vulgaris OX=3555 GN=BVRB_4g091100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21648 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12095 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009134, Ah034514 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g091100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18596, Sbi_jg37020 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4870 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017272 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23631, Sgl28831 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010142, gene:ENSEOMG00000029951 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0000210, CQ.Regalona.r1.4BG0026680 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30151470 |
| Apiaceae | Apium graveolens | 1 | Ag2G02306 |
| Arecaceae | Cocos nucifera | 1 | scaffold016239G000080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710672 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2141.V1.1, AsparagusV1_05.737.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G01156, Ftri16G30473 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G13235.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020839m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g11470.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g026840.2N, BniB07g055720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1550 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1712 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g04590 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0891s00004.v1.0, Dusal.0891s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g19250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1490, nbisL1-mrna-1491 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037978 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G11792, Lb2G11805 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.730, BH07.860, CH07.617 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0105190, gene-QOZ80_2BG0158640 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0572580.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021350 |
| Poaceae | Oryza coarctata | 1 | Oco03G004780 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g10510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G075500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202115, Pt_Chr0202159 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G328000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG022880, gene_TRIDC6BG028480 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G161500.1, TraesCS6B02G189600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb205890_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44068 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15139 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g09090 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.33 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19729 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4035 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22371 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.18 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010474 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7973 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22558 |
| Salicaceae | Populus euphratica | 3 | populus_peu00037, populus_peu17072, populus_peu17114 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627734 |
| Solanaceae | Solanum chilense | 1 | SOLCI006742700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002395 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24583_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2541 |
| Zosteraceae | Zostera marina | 1 | Zosma03g08920.v3.1 |