Basic Information
Locus ID:
gene_12059
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 43451439 | 43458752 | + | gene_12059 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 97,622.76 Da | 45.08 | 74.06 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 409 | 465 | 3.00287E-29 | - |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 470 | 828 | 4.6E-34 | IPR001525 |
| Pfam | PF01426 | BAH domain | 136 | 240 | 3.8E-11 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 410 | 466 | 3.1E-9 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 400 | 470 | 2.93E-13 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 295 | 831 | 7.95E-76 | IPR029063 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 408 | 848 | 1.0E-221 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 280 | 385 | 7.3E-15 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 628 | 797 | 1.0E-221 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 70 | 236 | 7.6E-48 | IPR043151 |
| SMART | SM00298 | chromo_7 | 409 | 468 | 4.4E-6 | IPR000953 |
| SMART | SM00439 | BAH_4 | 132 | 251 | 1.1E-16 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 478 | 827 | 1.8E-30 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 132 | 251 | 17.711845 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 296 | 838 | 44.409229 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 410 | 466 | 12.702301 | IPR000953 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 480 | 492 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 433 | 453 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 569 | 582 | 1.1E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 523 | 537 | 1.1E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 297 | 313 | 1.1E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_021771965.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F88 | DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana OX=3702 GN=CMT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R7E9 | Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_103070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology