Basic Information
Locus ID:
gene_12056
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 43421547 | 43425309 | + | gene_12056 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 35,208.86 Da | 49.82 | 66.86 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 59 | 97 | 1.26264E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 103 | 301 | 1.2E-76 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 101 | 1.06E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 114 | 304 | 3.6E-42 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 168 | 302 | 1.0E-34 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 167 | 4.8E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 27 | 113 | 9.6E-9 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 114 | 174 | 13.869804 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 61 | 97 | 9.568184 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_016729295.1 | E3 ubiquitin-protein ligase SINAT2-like [Gossypium hirsutum] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J9MV48 | RING-type E3 ubiquitin transferase OS=Gossypium schwendimanii OX=34291 GN=Goshw_024993 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology