Basic Information
Locus ID:
gene_12043
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 43088327 | 43093268 | + | gene_12043 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 71,191.18 Da | 60.91 | 94.28 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 110 | 155 | 2.9E-24 | IPR041101 |
| Pfam | PF18511 | F-box | 50 | 90 | 2.0E-18 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 113 | 483 | 7.59E-28 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 38 | 84 | 1.16E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 402 | 560 | 8.63E-15 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 47 | 88 | 1.1E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 89 | 625 | 1.6E-178 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 147 | 171 | 86.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 356 | 379 | 700.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 52 | 93 | 2.1E-5 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 331 | 355 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 474 | 497 | 140.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 523 | 548 | 180.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 172 | 197 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 414 | 438 | 0.52 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_021773054.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Chenopodium quinoa] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803KPI2 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology