Basic Information
Locus ID:
gene_12013
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 42505535 | 42507717 | + | gene_12013 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 19,586.48 Da | 72.97 | 90.84 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 88 | 119 | 1.8E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 81 | 133 | 1.57E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 135 | 1.5E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 89 | 129 | 3.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 89 | 130 | 11.427062 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 179 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11360.1 | RING-H2 finger A1B. Encodes a putative RING-H2 finger protein RHA1b. | 0 |
| RefSeq | XP_003591073.1 | E3 ubiquitin-protein ligase ATL6 [Medicago truncatula] | 0 |
| Q8H7N9 | E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QNN5 | RING-type domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_158960 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12013 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005893 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg512 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4129 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008342, GOSA_00008343 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24620, Sgl24646, Sgl29765, Sgl29773 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009190, CQ.Regalona.r1.4BG0009300 |