Basic Information
Locus ID:
gene_11925
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 41045829 | 41050297 | + | gene_11925 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.63 | 82,890.64 Da | 38.66 | 106.01 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like | 157 | 362 | 4.16E-9 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 56 | 2.35E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 299 | 618 | 2.2E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 150 | 551 | 4.3E-12 | IPR032675 |
| Coils | Coil | Coil | 618 | 638 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29830.2 | - | 0 |
| RefSeq | XP_021842425.1 | putative F-box protein At3g58860 [Spinacia oleracea] | 0 |
| Q9LJ48 | Putative F-box protein At3g29830 OS=Arabidopsis thaliana OX=3702 GN=At3g29830 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0K9R4T2 | F-box domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_106970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 8 | gene_11925, gene_1351, gene_1901, gene_1902, gene_23215 ... |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014650 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g041540 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11163, Sbi_jg46136, Sbi_jg46137, Sbi_jg46138 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20478, Seu_jg20479 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002378, GOSA_00005474 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35396, Sgl40771, Sgl55731, Sgl60945 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0009890 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1016, evm.TU.LG15.934 |