Basic Information
Locus ID:
gene_11774
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 38363907 | 38384427 | + | gene_11774 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 95,324.88 Da | 55.72 | 73.85 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 181 | 318 | 1.07795E-34 | - |
| CDD | cd00821 | PH | 21 | 120 | 3.02579E-12 | - |
| Pfam | PF00620 | RhoGAP domain | 181 | 325 | 3.0E-31 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 616 | 696 | 1.2E-21 | IPR025757 |
| Pfam | PF00169 | PH domain | 20 | 124 | 3.1E-13 | IPR001849 |
| SUPERFAMILY | SSF50729 | PH domain-like | 13 | 129 | 2.38E-18 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 375 | 2.75E-34 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 10 | 127 | 6.5E-18 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 150 | 374 | 7.2E-42 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 178 | 369 | 4.7E-27 | IPR000198 |
| SMART | SM00233 | PH_update | 19 | 127 | 2.7E-16 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 15.7531 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 372 | 30.338537 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 780 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 429 | - | - |
| Coils | Coil | Coil | 201 | 221 | - | - |
| Coils | Coil | Coil | 816 | 836 | - | - |
| Coils | Coil | Coil | 606 | 647 | - | - |
| Coils | Coil | Coil | 665 | 699 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_021734234.1 | rho GTPase-activating protein 7-like [Chenopodium quinoa] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S053 | Rho GTPase-activating protein 7-like OS=Spinacia oleracea OX=3562 GN=SOVF_009250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology