Basic Information
Locus ID:
gene_11747
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 37990129 | 37997880 | + | gene_11747 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 63,154.80 Da | 50.89 | 63.22 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00292 | EF1B | 135 | 209 | 3.83379E-32 | IPR014038 |
| CDD | cd16667 | RING-H2_RNF126_like | 441 | 482 | 1.93871E-25 | - |
| Pfam | PF14369 | zinc-ribbon | 247 | 278 | 3.7E-10 | IPR039525 |
| Pfam | PF00736 | EF-1 guanine nucleotide exchange domain | 139 | 209 | 2.7E-23 | IPR014038 |
| Pfam | PF13639 | Ring finger domain | 440 | 482 | 1.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 421 | 492 | 1.35E-21 | - |
| SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 10 | 65 | 5.84E-7 | IPR036282 |
| SUPERFAMILY | SSF54984 | eEF-1beta-like | 133 | 210 | 2.35E-25 | IPR036219 |
| Gene3D | G3DSA:3.30.70.60 | - | 130 | 214 | 8.9E-33 | IPR014717 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 405 | 486 | 6.3E-20 | IPR013083 |
| SMART | SM00888 | EF1_GNE_2 | 137 | 214 | 2.2E-16 | IPR014038 |
| SMART | SM00184 | ring_2 | 441 | 481 | 9.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 441 | 482 | 12.046688 | IPR001841 |
| ProSitePatterns | PS00824 | Elongation factor 1 beta/beta'/delta chain signature 1. | 101 | 109 | - | IPR001326 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 566 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 577 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_021772245.1 | probable E3 ubiquitin-protein ligase RHC1A [Chenopodium quinoa] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9D9X9 | RING-type E3 ubiquitin transferase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology