Basic Information
Locus ID:
gene_1174
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 35163335 | 35167604 | - | gene_1174 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 73,901.84 Da | 30.28 | 74.75 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 13 | 296 | 8.21461E-72 | - |
| CDD | cd10316 | RGL4_M | 337 | 437 | 1.27863E-29 | IPR029413 |
| CDD | cd10317 | RGL4_C | 449 | 635 | 4.93002E-58 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 9 | 205 | 2.7E-89 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 447 | 634 | 2.2E-56 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 361 | 432 | 2.1E-24 | IPR029413 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 444 | 635 | 1.19E-51 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 381 | 435 | 8.63E-10 | IPR013784 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 16 | 298 | 1.98E-8 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1120 | - | 337 | 434 | 2.1E-8 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 445 | 635 | 2.4E-22 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 7 | 307 | 1.8E-10 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24430.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_021852504.1 | probable rhamnogalacturonate lyase B isoform X1 [Spinacia oleracea] | 0 |
| TrEMBL | A0A0K9RZ62 | rhamnogalacturonan endolyase OS=Spinacia oleracea OX=3562 GN=SOVF_012950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology