Basic Information
Locus ID:
gene_1173
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 35155582 | 35160831 | - | gene_1173 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 75,366.49 Da | 30.96 | 72.93 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 41 | 322 | 3.08246E-78 | - |
| CDD | cd10317 | RGL4_C | 473 | 659 | 8.93949E-57 | - |
| CDD | cd10316 | RGL4_M | 362 | 461 | 2.26026E-34 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 37 | 231 | 1.2E-88 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 471 | 658 | 3.9E-57 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 385 | 456 | 5.7E-26 | IPR029413 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 43 | 322 | 2.04E-9 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 359 | 457 | 4.12E-10 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 468 | 659 | 6.8E-52 | IPR008979 |
| Gene3D | G3DSA:2.60.120.260 | - | 469 | 659 | 5.7E-23 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 359 | 457 | 6.0E-9 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 34 | 325 | 9.8E-13 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021852406.1 | rhamnogalacturonate lyase B [Spinacia oleracea] | 0 |
| TrEMBL | A0A803LK80 | rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology