Basic Information
Locus ID:
gene_11664
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 36034846 | 36041019 | + | gene_11664 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 63,120.74 Da | 52.41 | 84.19 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00125 | Core histone H2A/H2B/H3/H4 | 437 | 566 | 6.5E-51 | IPR007125 |
| SUPERFAMILY | SSF47113 | Histone-fold | 437 | 567 | 8.55E-55 | IPR009072 |
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A | 436 | 570 | 1.4E-73 | IPR009072 |
| SMART | SM00428 | h35 | 468 | 570 | 8.4E-74 | IPR000164 |
| ProSitePatterns | PS00959 | Histone H3 signature 2. | 501 | 509 | - | IPR000164 |
| ProSitePatterns | PS00322 | Histone H3 signature 1. | 449 | 455 | - | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 437 | 451 | 8.2E-83 | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 532 | 548 | 8.2E-83 | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 548 | 569 | 8.2E-83 | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 451 | 465 | 8.2E-83 | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 514 | 532 | 8.2E-83 | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 468 | 489 | 8.2E-83 | IPR000164 |
| PRINTS | PR00622 | Histone H3 signature | 492 | 509 | 8.2E-83 | IPR000164 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 471 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12070.1 | 0 | |
| RefSeq | XP_021863040.1 | uncharacterized protein LOC110801941 [Spinacia oleracea] | 0 |
| P59226 | Histone H3.1 OS=Arabidopsis thaliana OX=3702 GN=HTR2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A200Q2V7 | Histone H3 OS=Macleaya cordata OX=56857 GN=BVC80_8655g10 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16289, jg8586 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11664 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072190 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17940, Sbi_jg62567 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1143 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007096 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23908, Sgl29077 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009664, gene:ENSEOMG00000028473 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001000, CQ.Regalona.r1.4BG0001130 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30052320 |
| Apiaceae | Apium graveolens | 3 | Ag10G01697, Ag5G02713, Ag9G01427 |
| Arecaceae | Cocos nucifera | 3 | COCNU_11G010600, scaffold000339G000020 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702304, gene-LOC103705374, gene-LOC103711408 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1255.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G22389 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G12070.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028621m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g05430.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g056770.2N, BniB08g049250.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2024 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1997 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g05880, gene.Cymno05g08270 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate04g08240, gene.Thate04g08250, gene.Thate09g11700 ... |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.290 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024470 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G04563, Lb3G15633, Lb7G33195, Lb7G33197 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2402, AH07.3230, BH03.2527, BH07.3058, CH03.2726 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0143420, gene-QOZ80_2BG0198820 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0490790.1, HORVU.MOREX.r3.6HG0609680.1 |
| Poaceae | Oryza coarctata | 4 | Oco03G019870, Oco04G020680, Oco17G007910, Oco18G008130 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g48640.1, LOC_Os09g31360.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G223900, gene-BS78_04G255600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203532, Pt_Chr0501144 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr06G003640, Chr09G021600, Chr0G001490, Chr0G001500 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G425900, Tel6E01G513600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG042960, gene_TRIDC6BG050390 |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G265100.1, TraesCS5B02G264700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb252800_P001, Zm00001eb316700_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-19487, nbis-gene-22022, nbis-gene-8907 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g14282, Zma_g17030, Zma_g32790 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG22.617 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g17410, gene.Posoc03g10710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1073 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29949 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3562 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16438 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000015l.648 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015745 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4547 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20728 |
| Salicaceae | Populus euphratica | 2 | populus_peu04355, populus_peu35159 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643767 |
| Solanaceae | Solanum chilense | 1 | SOLCI003492000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003350 |
| Zosteraceae | Zostera marina | 4 | Zosma02g23340.v3.1, Zosma03g07600.v3.1, Zosma03g28890.v3.1 ... |