Basic Information
Locus ID:
gene_11649
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box kelch-repeat protein At3g23880-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 35783202 | 35786397 | + | gene_11649 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 70,397.72 Da | 46.83 | 83.91 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 46 | 82 | 3.8E-8 | IPR001810 |
| Pfam | PF00646 | F-box domain | 529 | 567 | 1.1E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 531 | 566 | 4.19E-7 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 45 | 112 | 1.01E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 46 | 84 | 1.8E-7 | - |
| SMART | SM00256 | fbox_2 | 47 | 86 | 3.3E-7 | IPR001810 |
| SMART | SM00256 | fbox_2 | 533 | 574 | 0.77 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 161 | 429 | 6.7E-20 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 41 | 87 | 11.00765 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_048502344.1 | F-box/kelch-repeat protein At3g23880-like [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A484KI55 | F-box domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS5370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_11648, gene_11649, gene_12920, gene_25916, gene_9757 |