Basic Information
Locus ID:
gene_11630
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 35385017 | 35411190 | + | gene_11630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.45 | 110,276.99 Da | 38.87 | 84.47 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 52 | 310 | 1.23455E-137 | - |
| CDD | cd00051 | EFh | 430 | 494 | 2.4812E-17 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 53 | 311 | 1.9E-75 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 429 | 494 | 3.7E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 359 | 418 | 1.0E-7 | IPR002048 |
| SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 798 | 947 | 1.24E-8 | IPR029044 |
| SUPERFAMILY | SSF47473 | EF-hand | 340 | 518 | 4.98E-42 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 52 | 312 | 1.07E-87 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 55 | 138 | 4.6E-26 | - |
| Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 736 | 963 | 3.2E-6 | IPR029044 |
| Gene3D | G3DSA:1.10.238.10 | - | 321 | 496 | 4.0E-49 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 139 | 320 | 4.4E-60 | - |
| SMART | SM00054 | efh_1 | 358 | 386 | 0.031 | IPR002048 |
| SMART | SM00220 | serkin_6 | 53 | 311 | 4.9E-102 | IPR000719 |
| SMART | SM00054 | efh_1 | 430 | 458 | 0.0036 | IPR002048 |
| SMART | SM00054 | efh_1 | 394 | 422 | 1.3 | IPR002048 |
| SMART | SM00054 | efh_1 | 468 | 496 | 1.4E-5 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 53 | 311 | 50.618813 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 426 | 461 | 13.397589 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 354 | 389 | 12.170192 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 464 | 499 | 13.983393 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 390 | 425 | 8.822743 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 439 | 451 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 59 | 86 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 477 | 489 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 403 | 415 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 173 | 185 | - | IPR008271 |
| PRINTS | PR01697 | Parvalbumin signature | 476 | 489 | 8.2E-5 | - |
| PRINTS | PR01697 | Parvalbumin signature | 439 | 455 | 8.2E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| Coils | Coil | Coil | 771 | 791 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_021728997.1 | calcium-dependent protein kinase 8-like [Chenopodium quinoa] | 0 |
| Q42438 | Calcium-dependent protein kinase 8 OS=Arabidopsis thaliana OX=3702 GN=CPK8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9AQN0 | Calcium-dependent protein kinase 8-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29239, jg622 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11630 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005002 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072780 |
| Amaranthaceae | Salicornia bigelovii | 6 | Sbi_jg16549, Sbi_jg18010, Sbi_jg32279, Sbi_jg4924 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg1219, Seu_jg12858, Seu_jg27403 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014405 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23840, Sgl29004 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009535, gene:ENSEOMG00000028959 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001590, CQ.Regalona.r1.4BG0001690 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30282290 |
| Apiaceae | Apium graveolens | 5 | Ag10G02089, Ag6G00119, AgUnG00662, AgUnG01262, AgUnG01271 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G015290 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702047 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2330.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G20632 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G45320.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001485m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g029600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0513 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0535 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g12650 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1583 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014915 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08429 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2082, BH06.1925, CH06.2124 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0543400, gene-QOZ80_6BG0496650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0716800.1 |
| Poaceae | Oryza coarctata | 1 | Oco11G011500 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g37430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G172500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400535, Pt_Chr0601868 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G029260, Chr05G006910, Chr10G016730, Chr11G005630 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG050630, gene_TRIDC7BG043290 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G362700.2, TraesCS7B02G266100.1 ... |
| Poaceae | Zea mays | 6 | Zm00001eb012290_P001, Zm00001eb084960_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10178, nbis-gene-41160 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30726, Zma_g32968 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1723, evm.TU.LG22.653 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g23540 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.169 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19550, nbisL1-mrna-9104 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3952 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22259 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.101 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010548 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8065 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9729 |
| Salicaceae | Populus euphratica | 2 | populus_peu25556, populus_peu27856 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609452 |
| Solanaceae | Solanum chilense | 1 | SOLCI001249300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027134 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25257_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2660 |
| Zosteraceae | Zostera marina | 1 | Zosma04g04120.v3.1 |