Basic Information
Locus ID:
gene_11553
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
PHR1-LIKE 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 33565411 | 33571675 | + | gene_11553 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 51,632.26 Da | 53.81 | 62.23 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14379 | MYB-CC type transfactor, LHEQLE motif | 342 | 387 | 1.1E-21 | IPR025756 |
| Pfam | PF00249 | Myb-like DNA-binding domain | 258 | 309 | 2.5E-9 | IPR017930 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 254 | 310 | 7.17E-18 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 255 | 314 | 3.7E-29 | - |
| TIGRFAM | TIGR01557 | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 257 | 310 | 5.3E-24 | IPR006447 |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. | 253 | 313 | 13.284124 | IPR017930 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 431 | - | - |
| Coils | Coil | Coil | 344 | 364 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04450.1 | Homeodomain-like superfamily protein. | 0 |
| RefSeq | XP_021864753.1 | myb family transcription factor PHL13-like [Spinacia oleracea] | 0 |
| F4J3P7 | Myb family transcription factor PHL13 OS=Arabidopsis thaliana OX=3702 GN=PHL13 PE=2 SV=1 | 0 | |
| TrEMBL | Q9M620 | CDPK substrate protein 1 OS=Mesembryanthemum crystallinum OX=3544 GN=csp1 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg14614, jg16222, jg34309, jg35448, jg8666 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11553, gene_5291 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah006391, Ah029192, Ah039399 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g084030 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg16560, Sbi_jg35435, Sbi_jg61076 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg22827, Seu_jg3557 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008113, GOSA_00024445 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl24971, Sgl30119, Sgl30291, Sgl53574, Sgl53575, Sgl74237 ... |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000004888, gene:ENSEOMG00000011036 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.4AG0011750, CQ.Regalona.r1.4BG0012130 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30015910, pistato.v30090910, pistato.v30091290 |
| Apiaceae | Apium graveolens | 3 | Ag10G00867, Ag2G01292, Ag9G02846 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G001220, COCNU_10G000910 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103703897, gene-LOC103711845, gene-LOC103715419 ... |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.763.V1.1, AsparagusV1_04.186.V1.1 ... |
| Asteraceae | Flaveria trinervia | 5 | Ftri10G26373, Ftri12G07139, Ftri18G32676, Ftri1G17807 ... |
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G20400.1, AT3G04450.1, AT4G28610.1, AT5G29000.2 |
| Brassicaceae | Eutrema salsugineum | 4 | Thhalv10002005m.g.v1.0, Thhalv10004351m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g19980.v2.2, Sp3g03300.v2.2, Sp7g26590.v2.2 |
| Brassicaceae | Brassica nigra | 8 | BniB01g059120.2N, BniB02g083670.2N, BniB03g011630.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1657 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl06G1437, Cgl06G1716 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g00750, gene.Cymno14g04270 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g06910, gene.Thate04g01310, gene.Thate08g24290 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9695 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2183 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00002304, Pov_00012768, Pov_00024583, Pov_00040406 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G21776 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3761, AH03.950, BH01.4108, BH03.1120, CH01.4371 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0246950, gene-QOZ80_7AG0565070 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0236270.1, HORVU.MOREX.r3.4HG0379380.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_050140, gene-QYE76_050674, gene-QYE76_068171 |
| Poaceae | Oryza coarctata | 4 | Oco05G012640, Oco06G013850, Oco13G006160, Oco14G006770 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g21240.1, LOC_Os07g25710.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G365800, gene-BS78_02G089100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0107838, Pt_Chr0205296 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G033880, Chr04G010450, Chr07G001430, Chr12G005750 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G183700, Tel4E01G313500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG013010, gene_TRIDC3BG017480 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G105500.4, TraesCS3B02G124100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb015750_P002, Zm00001eb306220_P003 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-1145, nbis-gene-1148, nbis-gene-1701 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g1279, Zma_g3700, Zma_g6379 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.541, evm.TU.LG03.924, evm.TU.LG04.224 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g01560 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_2_RagTag.1891, evm.TU.Scaffold_5_RagTag.1133 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11602, nbisL1-mrna-21141, nbisL1-mrna-3290 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-6139, nbisL1-mrna-9018 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10263, nbisL1-mrna-13824, nbisL1-mrna-7289 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000003l.436, evm.TU.utg000006l.400 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00005160, Maker00009484, Maker00013262 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12878, nbisL1-mrna-1422 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16300, nbisL1-mrna-5008 |
| Salicaceae | Populus euphratica | 3 | populus_peu19506, populus_peu30753, populus_peu37599 |
| Solanaceae | Lycium barbarum | 6 | gene-LOC132602979, gene-LOC132605717, gene-LOC132610425 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI001884400, SOLCI004140900, SOLCI004840100 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107016787, gene-LOC107020313, gene-LOC107022038 ... |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.243_chr01_+, gene_5563 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0579, TC02G2009 |
| Zosteraceae | Zostera marina | 1 | Zosma05g28890.v3.1 |