Basic Information
Locus ID:
gene_1155
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 34923367 | 34931577 | - | gene_1155 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 97,103.33 Da | 31.74 | 72.63 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 670 | 856 | 3.66786E-52 | - |
| CDD | cd10316 | RGL4_M | 559 | 658 | 3.99783E-24 | IPR029413 |
| CDD | cd10320 | RGL4_N | 283 | 538 | 1.36775E-52 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 668 | 855 | 2.6E-52 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 582 | 654 | 5.2E-18 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 286 | 480 | 7.4E-71 | IPR010325 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 665 | 856 | 1.62E-45 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 566 | 659 | 3.73E-7 | IPR013784 |
| Gene3D | G3DSA:2.60.40.1120 | - | 578 | 655 | 3.2E-5 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 283 | 570 | 3.8E-9 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 666 | 856 | 4.9E-17 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 226 | 241 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_021743766.1 | probable rhamnogalacturonate lyase B [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LV70 | Rhamnogalacturonan endolyase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology