Basic Information
Locus ID:
gene_1154
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 34885170 | 34902962 | - | gene_1154 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 401,341.22 Da | 51.30 | 88.48 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14327 | UBA_atUPL1_2_like | 1309 | 1345 | 4.17283E-17 | - |
| CDD | cd00078 | HECTc | 3286 | 3646 | 1.32884E-152 | IPR000569 |
| Pfam | PF00627 | UBA/TS-N domain | 1305 | 1342 | 2.2E-7 | IPR015940 |
| Pfam | PF06012 | Domain of Unknown Function (DUF908) | 107 | 410 | 7.6E-37 | IPR010309 |
| Pfam | PF14377 | Ubiquitin binding region | 2625 | 2654 | 3.0E-11 | IPR025527 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 3337 | 3647 | 9.8E-95 | IPR000569 |
| Pfam | PF14377 | Ubiquitin binding region | 2662 | 2693 | 1.2E-6 | IPR025527 |
| Pfam | PF14377 | Ubiquitin binding region | 2585 | 2615 | 1.9E-8 | IPR025527 |
| Pfam | PF06025 | Domain of Unknown Function (DUF913) | 473 | 810 | 1.6E-62 | IPR010314 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 3277 | 3640 | 9.68E-123 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 113 | 2189 | 2.4E-10 | IPR016024 |
| SUPERFAMILY | SSF46934 | UBA-like | 1288 | 1353 | 6.81E-15 | IPR009060 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 3262 | 3525 | 9.8E-96 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 1303 | 1377 | 2.9E-19 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 348 | 849 | 3.1E-7 | IPR011989 |
| Gene3D | G3DSA:6.10.250.1630 | - | 2627 | 2656 | 9.7E-6 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 3408 | 3492 | 9.8E-96 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 3529 | 3648 | 3.9E-48 | - |
| SMART | SM00119 | hect_3 | 3305 | 3648 | 2.0E-161 | IPR000569 |
| SMART | SM00165 | uba_6 | 1306 | 1344 | 1.0E-9 | IPR015940 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 1351 | 1370 | 9.496578 | IPR003903 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 3307 | 3648 | 108.541809 | IPR000569 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 1304 | 1345 | 14.884313 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1003 | 1037 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2458 | 2472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2046 | 2068 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 722 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2511 | 2585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2163 | 2196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1719 | 1762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 945 | 961 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1003 | 1026 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1542 | 1563 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1719 | 1745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1804 | 1842 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2211 | 2236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2408 | 2440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 939 | 961 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2160 | 2236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1806 | 1821 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2962 | 2983 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2386 | 2472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2393 | 2407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2536 | 2585 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55860.1 | ubiquitin-protein ligase 1. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_010671408.1 | E3 ubiquitin-protein ligase UPL2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GY23 | E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana OX=3702 GN=UPL1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9QUV5 | HECT-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_143570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg21280, jg21614, jg22646 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1154, gene_12129 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009079, Ah023597 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g005440, BVRB_4g090620 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg18534, Sbi_jg28955, Sbi_jg2982, Sbi_jg36934 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg4811, Seu_jg6898 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000946, GOSA_00017313 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl11833, Sgl15930, Sgl23580, Sgl23581, Sgl28781 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000011427, gene:ENSEOMG00000015904 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0009790, CQ.Regalona.r1.1BG0015970 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30042170 |
| Apiaceae | Apium graveolens | 3 | Ag10G02843, Ag2G01711, Ag4G01891 |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G006310, COCNU_02G014510, COCNU_11G011420 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103702442, gene-LOC103710828, gene-LOC103721479 ... |
| Asparagaceae | Asparagus officinalis | 5 | AsparagusV1_01.3576.V1.1, AsparagusV1_01.3578.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G09513, Ftri7G04341 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G55860.1, AT1G70320.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011171m.g.v1.0, Thhalv10011172m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g41460.v2.2, Sp6g10940.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g019570.2N, BniB04g019580.2N, BniB05g058900.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G1493, Ceq03G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl01G1657, Cgl03G1133 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno10g07430, gene.Cymno14g08200, gene.Cymno18g05190 |
| Dunaliellaceae | Dunaliella salina | 4 | Dusal.0006s00003.v1.0, Dusal.0006s00007.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g11030 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1803, nbisL1-mrna-9038 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG05.2045, evm.TU.LG06.244, evm.TU.LG09.1154 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00037172, Pov_00037932 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G11873, Lb4G23021, Lb4G23023 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.1323, AH03.1324, AH05.3344, BH03.1456, BH05.3353 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0388780, gene-QOZ80_5BG0435490 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0452860.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_002392, gene-QYE76_002393 |
| Poaceae | Oryza coarctata | 4 | Oco17G000920, Oco18G000990, Oco23G005360, Oco24G005230 |
| Poaceae | Oryza sativa | 2 | LOC_Os09g07900.1, LOC_Os12g24080.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K086400 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G014830, Chr06G015240, Chr10G003670, Chr11G015210 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G211200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG036140, gene_TRIDC5AG020600 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G121600.1, TraesCS5B02G112800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb094520_P002, Zm00001eb133420_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12544 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25774 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.609, evm.TU.LG04.1615, evm.TU.LG09.2070 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g08450, gene.Posoc06g13710 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_7_RagTag.64, evm.TU.Scaffold_7_RagTag.898 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19367, nbisL1-mrna-19688, nbisL1-mrna-9401 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-4015, nbisL1-mrna-4933, nbisL1-mrna-9737 |
| Rhizophoraceae | Ceriops zippeliana | 6 | nbisL1-mrna-20564, nbisL1-mrna-20565, nbisL1-mrna-22342 ... |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000002l.693, evm.TU.utg000018l.231 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00003277, Maker00010644, Maker00010697 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-11491, nbisL1-mrna-13070, nbisL1-mrna-7997 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-10148, nbisL1-mrna-17060, nbisL1-mrna-22585 |
| Salicaceae | Populus euphratica | 5 | populus_peu00891, populus_peu00892, populus_peu00893 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616848, gene-LOC132627653 |
| Solanaceae | Solanum chilense | 2 | SOLCI000395700, SOLCI002308300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107017094, gene-LOC107025338 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_13076, gene_17872, gene_3887 |
| Tamaricaceae | Tamarix chinensis | 3 | TC05G2598, TC06G0522, TC10G2282 |
| Zosteraceae | Zostera marina | 2 | Zosma03g00180.v3.1, Zosma05g30720.v3.1 |