Basic Information
Locus ID:
gene_1140
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 105649322 | 105652444 | + | gene_1140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 36,378.13 Da | 54.52 | 72.50 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 38 | 122 | 2.51909E-42 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 230 | 294 | 3.20551E-20 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 39 | 122 | 4.5E-19 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 230 | 296 | 1.5E-11 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 35 | 127 | 5.76E-31 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 227 | 299 | 1.7E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 27 | 134 | 5.6E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 213 | 303 | 2.8E-18 | IPR036910 |
| SMART | SM01014 | ARID_2 | 32 | 122 | 6.9E-29 | - |
| SMART | SM00501 | bright_3 | 36 | 127 | 1.7E-33 | IPR001606 |
| SMART | SM00398 | hmgende2 | 229 | 298 | 1.3E-13 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 230 | 297 | 14.033105 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 35 | 126 | 25.64349 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 229 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76110.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_022940773.1 | high mobility group B protein 9-like isoform X2 [Cucurbita moschata] | 0 |
| Q9SGS2 | High mobility group B protein 9 OS=Arabidopsis thaliana OX=3702 GN=HMGB9 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J1FQ88 | high mobility group B protein 9-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111446267 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology