Basic Information
Locus ID:
gene_11294
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr08 | 1638288 | 1643451 | + | gene_11294 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 62,169.59 Da | 52.12 | 68.34 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 339 | 403 | 7.83369E-21 | - |
| CDD | cd16872 | ARID_HMGB9-like | 75 | 160 | 1.3977E-47 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 77 | 160 | 4.1E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 339 | 406 | 6.8E-14 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 332 | 410 | 7.33E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 71 | 172 | 2.09E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 320 | 417 | 9.8E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 62 | 170 | 2.3E-26 | IPR036431 |
| SMART | SM00398 | hmgende2 | 338 | 407 | 7.9E-18 | IPR009071 |
| SMART | SM01014 | ARID_2 | 70 | 160 | 1.5E-29 | - |
| SMART | SM00501 | bright_3 | 74 | 165 | 2.8E-29 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 339 | 406 | 14.340875 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 73 | 164 | 25.292732 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 477 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 439 | 504 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 233 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_034686846.1 | high mobility group B protein 15 isoform X1 [Vitis riparia] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A5BNN4 | High mobility group B protein 15-like OS=Vitis vinifera OX=29760 GN=VITISV_021289 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology