HalophFGD

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Basic Information
Locus ID: gene_11242
Species & Taxonomic ID: Mesembryanthemum crystallinum & 3544
Genome Assembly: Koichi Toyokura Assembly
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
Super-Scaffold_8_Chr_3 19429207 19431547 + gene_11242
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.43 29,979.47 Da 51.91 76.30 -0.56
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF50249 Nucleic acid-binding proteins 146 194 2.11E-7 IPR012340
SUPERFAMILY SSF50249 Nucleic acid-binding proteins 79 150 6.85E-5 IPR012340
Gene3D G3DSA:2.40.50.140 - 120 209 9.8E-10 -
Best hit
Source Best Hit ID Description E-value
RefSeq XP_050248855.1 uncharacterized protein LOC126696111 [Quercus robur] 0
TrEMBL A0A484M4L0 DUF223 domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS25321 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Aizoaceae Mesembryanthemum crystallinum 3 gene_11242, gene_19988, gene_9588
Amaranthaceae Atriplex hortensis 13 Ah001361, Ah001371, Ah002563, Ah006984, Ah006985, Ah007876 ...
Ah010862, Ah025226, Ah029290, Ah030577, Ah037589, Ah038029, Ah038313
Amaranthaceae Salicornia bigelovii 19 Sbi_jg149, Sbi_jg150, Sbi_jg16705, Sbi_jg3120, Sbi_jg33012 ...
Sbi_jg34953, Sbi_jg39132, Sbi_jg40907, Sbi_jg40945, Sbi_jg4372, Sbi_jg52704, Sbi_jg52799, Sbi_jg56535, Sbi_jg59927, Sbi_jg6013, Sbi_jg6051, Sbi_jg6079, Sbi_jg6080, Sbi_jg62897
Amaranthaceae Salicornia europaea 16 Seu_jg10453, Seu_jg17430, Seu_jg17914, Seu_jg1932 ...
Seu_jg19683, Seu_jg20729, Seu_jg21730, Seu_jg23726, Seu_jg24231, Seu_jg24232, Seu_jg25610, Seu_jg26476, Seu_jg28167, Seu_jg3128, Seu_jg5300, Seu_jg6452
Amaranthaceae Suaeda aralocaspica 1 GOSA_00024462
Amaranthaceae Suaeda glauca 10 Sgl03380, Sgl08498, Sgl31135, Sgl31147, Sgl32416, Sgl36490 ...
Sgl37710, Sgl44281, Sgl49042, Sgl74206
Amaranthaceae Chenopodium album 4 gene:ENSEOMG00000005026, gene:ENSEOMG00000015694 ...
gene:ENSEOMG00000015873, gene:ENSEOMG00000034435
Amaranthaceae Chenopodium quinoa 2 CQ.Regalona.r1.2AG0003620, CQ.Regalona.r1.8BG0010240
Apiaceae Apium graveolens 27 Ag10G01033, Ag10G01574, Ag10G01896, Ag11G03153, Ag11G04618 ...
Ag1G01595, Ag1G01599, Ag2G00391, Ag2G01149, Ag2G01625, Ag3G01857, Ag3G01971, Ag3G02116, Ag3G02639, Ag3G02752, Ag4G02157, Ag5G01058, Ag5G01367, Ag6G02577, Ag7G00861, Ag7G00882, Ag9G01197, Ag9G02116, Ag9G02235, AgUnG00818, AgUnG01095, AgUnG01450
Arecaceae Cocos nucifera 2 COCNU_13G005920, scaffold010294G000060
Poaceae Echinochloa crus-galli 7 AH01.5146, BH01.1939, BH02.822, BH09.2202, BH09.2414 ...
CH01.2160, CH02.811
Poaceae Oryza coarctata 1 Oco15G006230
Poaceae Oryza sativa 8 LOC_Os05g02080.1, LOC_Os11g01460.1, LOC_Os11g38310.1 ...
LOC_Os11g41180.1, LOC_Os11g44840.1, LOC_Os11g47400.1, LOC_Os12g26670.1, LOC_Os12g38520.1
Poaceae Paspalum vaginatum 5 gene-BS78_01G191500, gene-BS78_05G005400 ...
gene-BS78_05G239400, gene-BS78_05G271300, gene-BS78_05G282000
Poaceae Puccinellia tenuiflora 7 Pt_Chr0201723, Pt_Chr0201724, Pt_Chr0201726, Pt_Chr0201806 ...
Pt_Chr0501697, Pt_Chr0501742, Pt_Chr0602034
Poaceae Sporobolus alterniflorus 2 Chr19G015510, Chr27G003730
Poaceae Thinopyrum elongatum 10 Tel1E01G147700, Tel1E01G147800, Tel1E01G242200 ...
Tel1E01G245800, Tel1E01G253400, Tel2E01G486300, Tel4E01G387800, Tel6E01G338100, Tel7E01G398200, Telscf1201G000300
Poaceae Triticum dicoccoides 6 gene_TRIDC1BG023090, gene_TRIDC2AG046570 ...
gene_TRIDC3AG028860, gene_TRIDC5BG032950, gene_TRIDC6BG030650, gene_TRIDC7BG033130
Solanaceae Lycium barbarum 3 gene-LOC132600651, gene-LOC132619582, gene-LOC132621884
Solanaceae Solanum chilense 7 SOLCI000818800, SOLCI000928800, SOLCI004930500 ...
SOLCI004985800, SOLCI005662500, SOLCI006437700, SOLCI007519000
Solanaceae Solanum pennellii 6 gene-LOC107003768, gene-LOC107019434, gene-LOC107019527 ...
gene-LOC107020428, gene-LOC107024868, gene-LOC114077490
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.