Basic Information
Locus ID:
gene_11226
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 104385762 | 104392145 | - | gene_11226 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 126,790.50 Da | 39.50 | 90.79 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 8 | 85 | 1.78616E-8 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 73 | 8.7E-6 | IPR000504 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 377 | 954 | 5.9E-181 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 5 | 91 | 1.63E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 91 | 1.0E-8 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 7 | 85 | 9.3E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 89 | 11.741675 | IPR000504 |
| Coils | Coil | Coil | 1031 | 1051 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_010678731.2 | RNA-dependent RNA polymerase 2 [Beta vulgaris subsp. vulgaris] | 0 |
| O82504 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RCQ7 | RNA-dependent RNA polymerase OS=Spinacia oleracea OX=3562 GN=SOVF_081360 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology