Basic Information
Locus ID:
gene_11211
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 17403707 | 17416646 | + | gene_11211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.45 | 39,904.83 Da | 49.10 | 78.59 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 322 | 364 | 4.9185E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.0298E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 325 | 361 | 7.2E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 144 | 181 | 2.6E-15 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 245 | 300 | 1.8E-22 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.3E-16 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 305 | 367 | 1.73E-15 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 85 | 6.68E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 127 | 186 | 6.22E-13 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 242 | 308 | 1.83E-22 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 2.5E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 317 | 365 | 2.6E-24 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 235 | 300 | 1.0E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 136 | 186 | 4.8E-21 | - |
| SMART | SM00165 | uba_6 | 143 | 183 | 2.4E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 326 | 363 | 1.7E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.4E-22 | IPR000626 |
| SMART | SM00727 | CBM | 243 | 286 | 1.6E-5 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 369 | 2.6E-127 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.344984 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 324 | 364 | 15.727711 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 141 | 184 | 13.703554 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 271 | 293 | 1.1E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 352 | 367 | 1.1E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 320 | 336 | 1.1E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 337 | 351 | 1.1E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 108 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_010695313.1 | probable ubiquitin receptor RAD23a isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q84L32 | Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8Z7R0 | Ubiquitin receptor RAD23 OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology