Basic Information
Locus ID:
gene_11144
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
occurring C-terminal to leucine-rich repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 14416287 | 14435068 | + | gene_11144 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 93,674.43 Da | 47.79 | 81.22 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF52058 | L domain-like | 110 | 245 | 3.4E-10 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 495 | 764 | 1.24E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 492 | 783 | 2.7E-42 | IPR015943 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 130 | 271 | 2.2E-12 | IPR032675 |
| SMART | SM00320 | WD40_4 | 669 | 707 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 623 | 664 | 6.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 526 | 569 | 0.39 | IPR001680 |
| SMART | SM00446 | LRRcap_2 | 387 | 405 | 1.5E-4 | IPR003603 |
| SMART | SM00320 | WD40_4 | 585 | 620 | 400.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 631 | 666 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 631 | 666 | 8.834696 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34280.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021751129.1 | uncharacterized protein LOC110716800 isoform X1 [Chenopodium quinoa] | 0 |
| Q8GYY7 | Protein DWD HYPERSENSITIVE TO UV-B 1 OS=Arabidopsis thaliana OX=3702 GN=DHU1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MD23 | LRRcap domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17383, jg28623, jg39976 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11144, gene_16717 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015913, Ah027590 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g127660 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13106, Sbi_jg25297, Sbi_jg52743, Sbi_jg9148 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19446, Seu_jg9101 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010151, GOSA_00011200 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl33855, Sgl39228, Sgl42996, Sgl47817, Sgl47818 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000002533, gene:ENSEOMG00000011679 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0025720, CQ.Regalona.r1.6BG0027260 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30205430 |
| Apiaceae | Apium graveolens | 2 | Ag4G01134, Ag6G02645 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G002780 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705263 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1241.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G31372 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G34280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024491m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g32080.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g004000.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G1386, Ceq09G0305 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1387, Cgl09G0341 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g05940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g15080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10552 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.565 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012205, Pov_00029138 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.1062, evm.TU.LG05.110, evm.TU.LG05.1608 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g17820 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.386 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4809 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1260 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9766 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.729 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004817 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2535 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6017 |
| Salicaceae | Populus euphratica | 2 | populus_peu23326, populus_peu36253 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598967, gene-LOC132621150 |
| Solanaceae | Solanum chilense | 3 | SOLCI002693900, SOLCI003634800, SOLCI006420300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008517, gene-LOC107011495 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9081 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2064 |