Basic Information
Locus ID:
gene_11143
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
MADS-box transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 100187185 | 100188681 | - | gene_11143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 22,414.75 Da | 45.86 | 100.46 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 72 | 4.95077E-37 | IPR033896 |
| Pfam | PF01486 | K-box region | 81 | 157 | 3.4E-16 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 2.5E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 76 | 1.12E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 84 | 1.7E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 4.8E-37 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 29.996759 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 84 | 189 | 9.498194 | IPR002487 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 9.2E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 9.2E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 9.2E-28 | IPR002100 |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69120.2 | - | 0 |
| RefSeq | XP_052480401.1 | MADS-box transcription factor 6 isoform X4 [Gossypium raimondii] | 0 |
| I1GN76 | Protein VERNALIZATION 1 OS=Brachypodium distachyon OX=15368 GN=VRN1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6W3Q4 | MADS-box transcription factor 23-like isoform X1 OS=Gossypium australe OX=47621 GN=EPI10_025873 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology