Basic Information
Locus ID:
gene_11143
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 14331899 | 14338199 | + | gene_11143 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 85,159.04 Da | 35.97 | 100.26 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 239 | 525 | 7.1693E-93 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 548 | 761 | 7.43273E-118 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 233 | 482 | 2.4E-34 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 567 | 715 | 4.6E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 26 | 64 | 1.4E-7 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 134 | 2.21E-34 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 230 | 532 | 1.11E-51 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 542 | 761 | 1.87E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 142 | 6.4E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 533 | 766 | 4.2E-75 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 199 | 531 | 8.8E-63 | IPR036640 |
| SMART | SM00382 | AAA_5 | 576 | 761 | 4.2E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 552 | 769 | 13.712305 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 233 | 513 | 36.65329 | IPR011527 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.5 | - | 0 |
| RefSeq | XP_048500127.1 | ABC transporter C family member 3 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KUU3 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology