Basic Information
Locus ID:
gene_11127
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 98987855 | 98990623 | - | gene_11127 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.84 | 48,881.76 Da | 45.14 | 71.38 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 368 | 407 | 5.3E-7 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 154 | 278 | 7.59E-12 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 363 | 414 | 1.74E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 354 | 412 | 1.5E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 148 | 321 | 6.0E-16 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 365 | 407 | 10.781668 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 450 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 450 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_030498261.1 | F-box protein At1g67340 [Cannabis sativa] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3J006 | Zinc finger, MYND-type OS=Corchorus olitorius OX=93759 GN=COLO4_20402 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology