Basic Information
Locus ID:
gene_11105
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 98079190 | 98085719 | - | gene_11105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 143,143.41 Da | 41.55 | 106.49 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 718 | 1008 | 1.43327E-84 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 101 | 388 | 5.10709E-92 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 414 | 619 | 1.31071E-93 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1031 | 1251 | 1.95413E-118 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 102 | 366 | 1.3E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1050 | 1198 | 9.7E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 722 | 960 | 7.0E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 441 | 571 | 1.6E-16 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 440 | 632 | 8.88E-47 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1023 | 1259 | 1.5E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 719 | 1013 | 2.09E-50 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 91 | 393 | 8.76E-33 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1016 | 1269 | 2.4E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 89 | 396 | 5.6E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 397 | 667 | 1.2E-64 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 680 | 1014 | 1.0E-54 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1059 | 1246 | 2.7E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 445 | 619 | 1.7E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 720 | 996 | 33.875343 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 103 | 380 | 33.489357 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 416 | 642 | 20.254889 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1033 | 1267 | 17.447113 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 544 | 558 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 649 | 698 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021746601.1 | putative ABC transporter C family member 15 [Chenopodium quinoa] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6Z5V5 | ABC-type xenobiotic transporter OS=Davidia involucrata OX=16924 GN=Din_007834 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology