Basic Information
Locus ID:
gene_11051
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 10742028 | 10745450 | + | gene_11051 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 81,276.39 Da | 41.90 | 94.86 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 346 | 388 | 5.9E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 341 | 403 | 2.09E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 348 | 389 | 2.2E-6 | - |
| SMART | SM00256 | fbox_2 | 350 | 390 | 3.9E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 441 | 628 | 1.5E-12 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 344 | 389 | 9.735919 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_043693042.1 | F-box protein CPR1-like [Telopea speciosissima] | 0 |
| TrEMBL | A0A834GUS0 | F-box domain-containing protein OS=Rhododendron simsii OX=118357 GN=RHSIM_Rhsim05G0180800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_11051, gene_11476, gene_11478, gene_8997 |