Basic Information
Locus ID:
gene_11024
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 9994225 | 10000463 | + | gene_11024 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 46,477.64 Da | 34.80 | 90.85 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 65 | 394 | 1.92956E-165 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 69 | 333 | 8.0E-122 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 333 | 391 | 1.15E-7 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 70 | 332 | 8.34E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 95 | 396 | 7.3E-110 | IPR027417 |
| SMART | SM00382 | AAA_5 | 119 | 293 | 5.8E-6 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 66 | 390 | 7.9E-140 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 97 | 256 | 36.491013 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 266 | 337 | 27.150829 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 278 | 286 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 275 | 303 | 1.1E-78 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 308 | 337 | 1.1E-78 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 227 | 256 | 1.1E-78 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 189 | 218 | 1.1E-78 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 363 | 380 | 1.1E-78 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 155 | 184 | 1.1E-78 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 66 | 395 | 44.015923 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 413 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_010696516.1 | DNA repair protein recA homolog 3, mitochondrial isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8ZFQ8 | DNA repair protein recA homolog 3, mitochondrial OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology