Basic Information
Locus ID:
gene_10948
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 7983832 | 8000645 | + | gene_10948 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 82,891.63 Da | 50.82 | 78.45 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 26 | 226 | 2.23774E-102 | - |
| CDD | cd18794 | SF2_C_RecQ | 227 | 375 | 7.48267E-61 | - |
| Pfam | PF16124 | RecQ zinc-binding | 379 | 450 | 1.1E-11 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 260 | 364 | 8.8E-11 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 41 | 206 | 1.4E-17 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 76 | 386 | 3.01E-47 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 227 | 468 | 5.6E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 7 | 226 | 3.6E-87 | IPR027417 |
| SMART | SM00490 | helicmild6 | 270 | 366 | 1.2E-16 | IPR001650 |
| SMART | SM00487 | ultradead3 | 33 | 235 | 2.2E-31 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 26 | 455 | 5.4E-137 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 45 | 219 | 23.693762 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 246 | 405 | 13.969612 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 654 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 706 | 744 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_021756684.1 | LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like 3 [Chenopodium quinoa] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9EJK4 | ATP-dependent DNA helicase OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology