Basic Information
Locus ID:
gene_10945
Species & Taxonomic ID:
Reaumuria soongarica & 194564
Genome Assembly:
GCA_040143545.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr07 | 88566816 | 88580523 | - | gene_10945 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 124,282.91 Da | 41.40 | 81.30 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 920 | 953 | 9.0E-4 | IPR001680 |
| Pfam | PF17814 | LisH-like dimerisation domain | 5 | 33 | 4.6E-5 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 453 | 490 | 0.0032 | IPR001680 |
| SUPERFAMILY | SSF69322 | Tricorn protease domain 2 | 778 | 1100 | 6.54E-28 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 346 | 443 | 4.21E-6 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 421 | 958 | 8.63E-45 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 776 | 1099 | 8.0E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 312 | 547 | 5.3E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 574 | 693 | 2.5E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 494 | 535 | 0.0025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 914 | 953 | 6.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 581 | 440.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 5.4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.4E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 831 | 868 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 584 | 624 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 444 | 5.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 871 | 911 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 491 | 3.3E-4 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 6.7E-14 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 921 | 953 | 10.442869 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.012835 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 500 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 921 | 962 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.43155 | IPR006595 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_028062897.1 | topless-related protein 4-like isoform X1 [Camellia sinensis] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4S4EQZ5 | Topless-related protein 4 OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_017481 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology