Basic Information
Locus ID:
gene_10939
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Oligouridylate-binding protein 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 7577669 | 7588941 | + | gene_10939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 46,087.16 Da | 50.14 | 66.71 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 141 | 215 | 6.51728E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 57 | 127 | 6.68148E-38 | - |
| CDD | cd12354 | RRM3_TIA1_like | 261 | 335 | 1.22448E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | 1.9E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 263 | 329 | 4.1E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 57 | 123 | 3.6E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 132 | 220 | 1.75E-28 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 44 | 133 | 1.48E-23 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 253 | 341 | 2.69E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 238 | 339 | 1.3E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 138 | 5.2E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 139 | 219 | 3.0E-26 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 141 | 214 | 2.0E-25 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 141 | 214 | 0.0026 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 56 | 125 | 1.6E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 262 | 331 | 1.2E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | 17.898676 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 55 | 129 | 15.647363 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 261 | 335 | 15.203922 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 244 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_007202165.1 | oligouridylate-binding protein 1 isoform X1 [Prunus persica] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9A360 | Oligouridylate-binding protein 1-like OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology