Basic Information
Locus ID:
gene_10845
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 5630826 | 5638591 | + | gene_10845 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 56,383.97 Da | 45.46 | 85.16 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 20 | 81 | 6.8E-7 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 223 | 277 | 7.7E-9 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 88 | 208 | 2.2E-16 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 276 | 3.45E-52 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 320 | 377 | 1.13E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 309 | 389 | 9.0E-6 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 12 | 142 | 4.0E-32 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 148 | 301 | 1.6E-25 | IPR036770 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.003 | IPR002110 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 0.002 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 148 | 0.33 | IPR002110 |
| SMART | SM00184 | ring_2 | 321 | 370 | 0.0067 | IPR001841 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 9.8E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 1.4E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 256 | 284 | 730.0 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 9.99171 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 12.142647 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 8.905817 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 207 | 12.195709 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 117 | 138 | 9.53764 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 13.25033 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 321 | 371 | 9.346889 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 117 | 138 | 9.516039 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 10.71288 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 12.68942 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 9.516039 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 336 | 345 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_010687705.2 | probable E3 ubiquitin-protein ligase XBOS32 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9QNZ5 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_158010 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology