Basic Information
Locus ID:
gene_10727
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 3466219 | 3470634 | + | gene_10727 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 31,785.48 Da | 39.10 | 70.71 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 44 | 291 | 2.2E-79 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 177 | 281 | 3.73E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 175 | 294 | 1.4E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 180 | 282 | 24.44614 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 37 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_021865847.1 | auxin-responsive protein IAA27 [Spinacia oleracea] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9DCF9 | Auxin-responsive protein OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology