Basic Information
Locus ID:
gene_1062
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
RING FYVE PHD-type zinc finger family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_2_Chr_2 | 33214301 | 33230866 | - | gene_1062 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 72,126.12 Da | 41.85 | 69.77 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 446 | 491 | 6.8E-14 | IPR019787 |
| Pfam | PF00628 | PHD-finger | 288 | 334 | 8.0E-8 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 445 | 495 | 4.87E-15 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 395 | 445 | 2.06E-5 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 263 | 334 | 1.73E-11 | IPR011011 |
| Gene3D | G3DSA:2.30.30.1150 | - | 218 | 335 | 5.0E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 388 | 496 | 3.1E-20 | IPR013083 |
| SMART | SM00249 | PHD_3 | 448 | 491 | 4.3E-11 | IPR001965 |
| SMART | SM00249 | PHD_3 | 285 | 333 | 5.6E-7 | IPR001965 |
| SMART | SM00184 | ring_2 | 446 | 490 | 0.0065 | IPR001841 |
| SMART | SM00184 | ring_2 | 396 | 444 | 2.5 | IPR001841 |
| SMART | SM00249 | PHD_3 | 395 | 445 | 0.88 | IPR001965 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 446 | 491 | 9.169853 | IPR001841 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 443 | 493 | 10.5135 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 283 | 335 | 9.498899 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 441 | 490 | - | IPR019786 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G77250.1 | RING/FYVE/PHD-type zinc finger family protein. | 0 |
| RefSeq | XP_010679022.1 | PHD finger protein EHD3 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q6ZJM9 | PHD finger protein EHD3 OS=Oryza sativa subsp. japonica OX=39947 GN=EHD3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C9F2S1 | PHD-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg23130, jg6439 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1062 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024170 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g010340 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg19420, Sbi_jg42121, Sbi_jg43986, Sbi_jg44694 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg17950, Seu_jg27401 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020152 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11684, Sgl17184, Sgl17197 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014277, gene:ENSEOMG00000034565 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0013140, CQ.Regalona.r1.1BG0012920 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30044490, pistato.v30273600 |
| Apiaceae | Apium graveolens | 2 | Ag3G01097, Ag4G01293 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G020240, scaffold001294G000030 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702611, gene-LOC103718708 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.2754.V1.1, AsparagusV1_10.564.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26624, Ftri1G25570 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G77250.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018403m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g32420.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g049610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1885 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2025 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno08g07190, gene.Cymno18g00870 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0759s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g12490, gene.Thate09g01310 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12291, nbisL1-mrna-1693, nbisL1-mrna-5262 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.816 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00037864, Pov_00038701 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34145 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.2025, AH08.36, BH01.1431, CH02.2250, CH02.4142, CH08.37 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0020950, gene-QOZ80_1BG0070930 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0263560.1, HORVU.MOREX.r3.7HG0706860.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_016428, gene-QYE76_033634, gene-QYE76_053220 |
| Poaceae | Oryza coarctata | 6 | Oco01G012280, Oco01G026680, Oco02G012430, Oco02G027690 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g36670.1, LOC_Os01g66070.1, LOC_Os08g01420.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G359200, gene-BS78_07G005300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0402715, Pt_Chr0405444, Pt_Chr0602969 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G017710, Chr03G021470, Chr05G016340, Chr0G027550 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G353200, Tel7E01G556700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG028880, gene_TRIDC3BG034330 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS3D02G202300.1, TraesCS7A02G324700.2 ... |
| Poaceae | Zea mays | 4 | Zm00001eb145630_P001, Zm00001eb174450_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-41383, nbis-gene-47296, nbis-gene-51968 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g10456, Zma_g22332, Zma_g23484, Zma_g8074 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1537, evm.TU.LG10.1394 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g18880, gene.Posoc07g12920 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.600 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18694, nbisL1-mrna-9652 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2493 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18156 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.619 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003177 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-2891 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20438 |
| Salicaceae | Populus euphratica | 2 | populus_peu14793, populus_peu32469 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627186 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107015683 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.25372_chr11_+, STRG.9888_chr06_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2518, TC09G1984 |
| Zosteraceae | Zostera marina | 1 | Zosma03g24980.v3.1 |