Basic Information
Locus ID:
gene_10619
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 1348925 | 1358861 | + | gene_10619 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.26 | 125,794.86 Da | 38.80 | 79.84 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 461 | 495 | 0.0056 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 500 | 538 | 0.031 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 923 | 957 | 0.0011 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 358 | 670 | 3.91E-41 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 842 | 1102 | 9.16E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 774 | 1110 | 2.6E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 522 | 698 | 8.8E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 317 | 520 | 1.3E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 918 | 957 | 6.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 498 | 539 | 0.0027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 387 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 836 | 872 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 495 | 0.0043 | IPR001680 |
| SMART | SM00320 | WD40_4 | 631 | 672 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 408 | 448 | 0.99 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1009 | 1050 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 588 | 628 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 875 | 915 | 5.1 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 1.8E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 544 | 585 | 55.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 5.0E-13 | IPR006595 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.086278 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 925 | 966 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.958267 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 461 | 504 | 10.274523 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 925 | 959 | 10.284687 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 482 | 496 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1145 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_010687939.1 | topless-related protein 4 [Beta vulgaris subsp. vulgaris] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LH73 | Topless-related protein 4-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology