Basic Information
Locus ID:
gene_10598
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Translocase of chloroplast 90
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 982694 | 988930 | + | gene_10598 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 88,256.93 Da | 48.51 | 89.55 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04548 | AIG1 family | 173 | 332 | 3.5E-25 | IPR006703 |
| Pfam | PF11886 | Translocase of chloroplast 159/132, membrane anchor domain | 519 | 782 | 3.0E-115 | IPR024283 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 168 | 308 | 2.78E-20 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 141 | 389 | 4.7E-54 | IPR027417 |
| TIGRFAM | TIGR00993 | 3a0901s04IAP86: chloroplast protein import component Toc86/159, G and M domains | 72 | 787 | 5.0E-213 | IPR005690 |
| ProSiteProfiles | PS51720 | AIG1-type G domain profile. | 170 | 401 | 29.066803 | IPR006703 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 86 | - | - |
| Coils | Coil | Coil | 485 | 505 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G20300.1 | Avirulence induced gene (AIG1) family protein. | 0 |
| RefSeq | XP_021741808.1 | translocase of chloroplast 90, chloroplastic-like [Chenopodium quinoa] | 0 |
| Q6S5G3 | Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TOC90 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LH39 | AIG1-type G domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology