Basic Information
Locus ID:
gene_10561
Species & Taxonomic ID:
Mesembryanthemum crystallinum & 3544
Genome Assembly:
Koichi Toyokura Assembly
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Super-Scaffold_8_Chr_3 | 263096 | 268197 | + | gene_10561 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 78,517.58 Da | 39.67 | 83.98 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 363 | 695 | 4.13528E-137 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 38 | 181 | 1.3E-22 | IPR001245 |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 369 | 689 | 2.5E-75 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 368 | 702 | 2.97E-61 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 591 | 661 | 3.24E-14 | IPR029070 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 295 | 1.57E-40 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 28 | 100 | 1.8E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 101 | 198 | 6.0E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 199 | 278 | 3.5E-8 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 590 | 660 | 1.3E-101 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 381 | 689 | 1.3E-101 | - |
| SMART | SM00636 | 2g34 | 365 | 689 | 6.8E-94 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 365 | 704 | 67.250839 | IPR001223 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 310 | 18.591169 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_044471359.1 | uncharacterized protein LOC123200285 [Mangifera indica] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2M2N3 | Protein kinase domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS308348 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology